This paper reports changes in vegetation distribution and species cover in relation to soil factors and hydrology in a semiarid Mediterranean salt marsh adjacent to the Mar Menor saline lagoon. Species cover, soil salinity, and the groundwater level were monitored between 1991 and 1993 and between 2002 and 2004, and total organic carbon, total nitrogen, total phosphorus, nitrates, ammonium and exchangeable phosphorus were measured in the soils in both study periods. In addition, three soil profiles were described in August 1992 and August 2004. The results indicate an elevation of the water table throughout the 13-year period, which was attributable to water flowing from areas with intensive agri culture. Flooding increased and soil salinity dropped in the most saline sites and increased in the least saline ones. The morphology of the soil profiles reflected the increase in flooding periods, due to the appearance of a greyer matrix in the deeper horizons and a more diffuse pattern of Fe mottles. Following these environmental changes, Sarcocornia fruticosa, Phragmites australis and Juncus maritimus strongly expanded at the wettest sites, which led to the disappearance of the original zonation pattern. The cover of Limonium delicatulum, in turn, decreased with the increase in moisture but increased following the increase in salinity. Changes in soil nutrients were only very evident in the sandy soils of the beach, probably due to the influence of organic debris deposited on the shoreline by the storms and due to the strong increase in the colonisation of this habitat by perennial species. According to the results obtained, control measures are needed in order to preserve habitat diversity in this and other salt marshes of this area. Monitoring of the vegetation distribution could be a useful tool to identify environmental impacts, in order to implement remedial actions.